STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_009702Alkyl transferase; Belongs to the UPP synthase family. (366 aa)    
Predicted Functional Partners:
BN1708_012592
Uncharacterized protein.
 
 
 0.995
BN1708_012590
Uncharacterized protein.
 
 
 0.995
BN1708_002371
Uncharacterized protein.
     
 0.954
BN1708_009635
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.944
BN1708_010757
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.944
BN1708_011886
Amidohydro-rel domain-containing protein.
  
 
 0.942
BN1708_018314
Uncharacterized protein.
  
 
 0.942
BN1708_003249
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
     
 0.921
BN1708_003248
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
     
 0.921
BN1708_016598
Uncharacterized protein.
     
 0.921
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
Server load: low (18%) [HD]