STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_006774Uncharacterized protein. (456 aa)    
Predicted Functional Partners:
BN1708_010254
Uncharacterized protein.
    
 0.977
BN1708_010423
N-acetyltransferase domain-containing protein; Belongs to the type-B carboxylesterase/lipase family.
    
 0.977
BN1708_017861
CPSF_A domain-containing protein.
    
 0.977
BN1708_010354
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.943
BN1708_002991
MPN domain-containing protein.
    
  0.828
BN1708_003733
WD_REPEATS_REGION domain-containing protein.
     
 0.808
BN1708_008907
DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.
     
 0.808
BN1708_019859
Uncharacterized protein.
    
  0.793
BN1708_001663
PCI domain-containing protein.
    
  0.793
BN1708_001636
PCI domain-containing protein.
    
  0.793
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.