Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_002296Uncharacterized protein. (399 aa)    
Predicted Functional Partners:
BN1708_002448
WD_REPEATS_REGION domain-containing protein.
   
 0.998
BN1708_000610
Uncharacterized protein.
   
 0.974
BN1708_016655
Uncharacterized protein.
   
 0.974
BN1708_017533
Nop domain-containing protein.
   
 0.972
BN1708_000388
Nop domain-containing protein.
   
 0.972
BN1708_000379
Nop domain-containing protein.
   
 0.972
BN1708_017669
Uncharacterized protein.
   
 0.971
BN1708_013769
Uncharacterized protein.
   
 0.971
BN1708_001002
Uncharacterized protein.
   
 0.971
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
    
 0.971
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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