STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_011297Uncharacterized protein. (477 aa)    
Predicted Functional Partners:
BN1708_010366
Nuclear cap-binding protein subunit 2.
    
 0.800
BN1708_004582
Nuclear cap-binding protein subunit 2.
    
 0.800
BN1708_000740
RRM domain-containing protein.
   
 0.798
BN1708_003443
Uncharacterized protein.
   
  0.745
BN1708_000475
RPOL4c domain-containing protein.
    
  0.715
BN1708_000473
RPOL4c domain-containing protein.
    
  0.715
BN1708_004483
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 
  0.712
BN1708_006316
SAP domain-containing protein.
   
  0.712
BN1708_005535
Uncharacterized protein.
   
  0.709
BN1708_005537
Aldo_ket_red domain-containing protein.
   
  0.709
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.