BN1708_003182 protein (Verticillium longisporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN1708_003182

Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP. (1109 aa)

Predicted Functional Partners:

BN1708_010166

0.837

BN1708_010389

0.818

BN1708_000868

0.818

BN1708_012446

0.733

BN1708_003985

0.733

BN1708_007219

0.733

BN1708_007575

0.674

BN1708_012328

0.669

BN1708_005221

0.628

BN1708_017798

0.610

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_000868	BN1708_003182	A0A0G4M7V3	A0A0G4L9W2	Uncharacterized protein.	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.818
BN1708_000868	BN1708_005221	A0A0G4M7V3	A0A0G4M8G7	Uncharacterized protein.	Uncharacterized protein.	0.461
BN1708_003182	BN1708_000868	A0A0G4L9W2	A0A0G4M7V3	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Uncharacterized protein.	0.818
BN1708_003182	BN1708_003985	A0A0G4L9W2	A0A0G4LTN0	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.733
BN1708_003182	BN1708_005221	A0A0G4L9W2	A0A0G4M8G7	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Uncharacterized protein.	0.628
BN1708_003182	BN1708_007219	A0A0G4L9W2	A0A0G4MRQ7	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.733
BN1708_003182	BN1708_007575	A0A0G4L9W2	A0A0G4MUR3	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Adenylate kinase isoenzyme 6 homolog; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity. May be involved in rRNA maturation and transcription regulation; Belongs to the HAM1 NTPase family.	0.674
BN1708_003182	BN1708_010166	A0A0G4L9W2	A0A0G4KPT3	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.837
BN1708_003182	BN1708_010389	A0A0G4L9W2	A0A0G4KR46	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Uncharacterized protein.	0.818
BN1708_003182	BN1708_012328	A0A0G4L9W2	A0A0G4NB22	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Nudix hydrolase domain-containing protein.	0.669
BN1708_003182	BN1708_012446	A0A0G4L9W2	A0A0G4LAC8	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Glutamine amidotransferase type-1 domain-containing protein.	0.733
BN1708_003182	BN1708_017798	A0A0G4L9W2	A0A0G4LEA3	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	RIBORED_LARGE domain-containing protein.	0.610
BN1708_003985	BN1708_003182	A0A0G4LTN0	A0A0G4L9W2	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.733
BN1708_003985	BN1708_005221	A0A0G4LTN0	A0A0G4M8G7	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Uncharacterized protein.	0.778
BN1708_003985	BN1708_007575	A0A0G4LTN0	A0A0G4MUR3	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Adenylate kinase isoenzyme 6 homolog; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity. May be involved in rRNA maturation and transcription regulation; Belongs to the HAM1 NTPase family.	0.859
BN1708_003985	BN1708_010166	A0A0G4LTN0	A0A0G4KPT3	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.944
BN1708_003985	BN1708_012328	A0A0G4LTN0	A0A0G4NB22	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	Nudix hydrolase domain-containing protein.	0.817
BN1708_003985	BN1708_017798	A0A0G4LTN0	A0A0G4LEA3	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	RIBORED_LARGE domain-containing protein.	0.748
BN1708_005221	BN1708_000868	A0A0G4M8G7	A0A0G4M7V3	Uncharacterized protein.	Uncharacterized protein.	0.461
BN1708_005221	BN1708_003182	A0A0G4M8G7	A0A0G4L9W2	Uncharacterized protein.	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.628

page 1 of 4

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About