STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_000407POLXc domain-containing protein. (799 aa)    
Predicted Functional Partners:
BN1708_006865
Uncharacterized protein.
    
 0.914
BN1708_006861
Uncharacterized protein.
    
 0.914
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 0.891
BN1708_006882
XPGI domain-containing protein.
   
 0.891
BN1708_005202
DNA ligase.
  
 0.885
BN1708_005982
DNA_ligase_A_N domain-containing protein.
  
 0.885
BN1708_005983
DNA_LIGASE_A3 domain-containing protein.
  
 0.885
BN1708_006806
DNA_LIGASE_A3 domain-containing protein.
  
 0.885
BN1708_020541
DNA_ligase_A_N domain-containing protein.
  
 0.875
BN1708_004889
DNA ligase.
  
 0.875
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.