BN1708_000374 protein (Verticillium longisporum)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

BN1708_000374

Ribosomal_L2_C domain-containing protein. (392 aa)

Predicted Functional Partners:

BN1708_007284

0.998

BN1708_005127

0.998

BN1708_009110

0.997

BN1708_017495

0.997

BN1708_011712

0.997

BN1708_001197

0.997

BN1708_007351

0.997

BN1708_011134

0.996

BN1708_012096

0.996

BN1708_004020

0.996

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_000374	BN1708_001197	A0A0G4LCS8	A0A0G4MMU7	Ribosomal_L2_C domain-containing protein.	Ribosomal_L5_C domain-containing protein.	0.997
BN1708_000374	BN1708_004020	A0A0G4LCS8	A0A0G4LTR7	Ribosomal_L2_C domain-containing protein.	Ribosomal_S10 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.996
BN1708_000374	BN1708_005127	A0A0G4LCS8	A0A0G4N4P3	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.998
BN1708_000374	BN1708_007284	A0A0G4LCS8	A0A0G4MS35	Ribosomal_L2_C domain-containing protein.	Ribosomal_L19e domain-containing protein.	0.998
BN1708_000374	BN1708_007351	A0A0G4LCS8	A0A0G4MQH1	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.997
BN1708_000374	BN1708_009110	A0A0G4LCS8	A0A0G4KF41	Ribosomal_L2_C domain-containing protein.	Ribosomal_L5_C domain-containing protein.	0.997
BN1708_000374	BN1708_011134	A0A0G4LCS8	A0A0G4KYH6	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.996
BN1708_000374	BN1708_011712	A0A0G4LCS8	A0A0G4L3H4	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.997
BN1708_000374	BN1708_012096	A0A0G4LCS8	A0A0G4L717	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.996
BN1708_000374	BN1708_017495	A0A0G4LCS8	A0A0G4L324	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.997
BN1708_001197	BN1708_000374	A0A0G4MMU7	A0A0G4LCS8	Ribosomal_L5_C domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.997
BN1708_001197	BN1708_004020	A0A0G4MMU7	A0A0G4LTR7	Ribosomal_L5_C domain-containing protein.	Ribosomal_S10 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.997
BN1708_001197	BN1708_005127	A0A0G4MMU7	A0A0G4N4P3	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.999
BN1708_001197	BN1708_007284	A0A0G4MMU7	A0A0G4MS35	Ribosomal_L5_C domain-containing protein.	Ribosomal_L19e domain-containing protein.	0.999
BN1708_001197	BN1708_007351	A0A0G4MMU7	A0A0G4MQH1	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.997
BN1708_001197	BN1708_011134	A0A0G4MMU7	A0A0G4KYH6	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.997
BN1708_001197	BN1708_011712	A0A0G4MMU7	A0A0G4L3H4	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.997
BN1708_001197	BN1708_012096	A0A0G4MMU7	A0A0G4L717	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.999
BN1708_001197	BN1708_017495	A0A0G4MMU7	A0A0G4L324	Ribosomal_L5_C domain-containing protein.	Uncharacterized protein.	0.997
BN1708_004020	BN1708_000374	A0A0G4LTR7	A0A0G4LCS8	Ribosomal_S10 domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Ribosomal_L2_C domain-containing protein.	0.996

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Network Stats

number of nodes:

3

number of edges:

2

average node degree:

1.33

avg. local clustering coefficient:

0.667

expected number of edges:

2

PPI enrichment p-value:

0.526

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:7656

Sugar/inositol transporter, and Copper amine oxidase

3 of 30

2.52

3.42

5.21e-05

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map04113

Meiosis - yeast

3 of 157

1.8

2.09

0.00063

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-429593

Inositol transporters

3 of 70

2.15

2.57

0.00037

MAP-425366

Transport of bile salts and organic acids, metal ions and amine compounds

3 of 118

1.92

2.15

0.00086

MAP-425407

SLC-mediated transmembrane transport

3 of 236

1.62

1.5

0.0045

MAP-382551

Transport of small molecules

3 of 413

1.38

1.03

0.0177

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF07690

Major Facilitator Superfamily

3 of 199

1.69

1.43

0.0079

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR005829

Sugar transporter, conserved site

3 of 55

2.25

2.55

0.00052

IPR005828

Major facilitator, sugar transporter-like

3 of 64

2.19

2.5

0.00052

IPR020846

Major facilitator superfamily domain

3 of 190

1.71

1.49

0.0066

IPR036259

MFS transporter superfamily

3 of 272

1.56

1.2

0.0144

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