BN1708_017793 protein (Verticillium longisporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN1708_017793

Uncharacterized protein. (157 aa)

Predicted Functional Partners:

BN1708_003338

0.802

BN1708_001521

0.802

BN1708_008335

0.802

BN1708_000260

0.726

BN1708_017378

0.726

BN1708_009971

0.683

BN1708_003447

0.683

BN1708_002078

0.639

BN1708_003245

0.639

BN1708_007811

0.639

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_000260	BN1708_001521	A0A0G4KFZ8	A0A0G4MYK4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Ubiquitin-like domain-containing protein.	0.999
BN1708_000260	BN1708_002078	A0A0G4KFZ8	A0A0G4KH20	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Ubiquitin-like domain-containing protein.	0.999
BN1708_000260	BN1708_003245	A0A0G4KFZ8	A0A0G4LD50	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.999
BN1708_000260	BN1708_003338	A0A0G4KFZ8	A0A0G4LG00	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	CIA30 domain-containing protein.	0.999
BN1708_000260	BN1708_003447	A0A0G4KFZ8	A0A0G4LHB0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	SH3 domain-containing protein.	0.999
BN1708_000260	BN1708_007811	A0A0G4KFZ8	A0A0G4LSL8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	AN1-type domain-containing protein.	0.999
BN1708_000260	BN1708_008335	A0A0G4KFZ8	A0A0G4N2R8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Ubiquitin-like domain-containing protein.	0.999
BN1708_000260	BN1708_009971	A0A0G4KFZ8	A0A0G4KMH4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	SH3 domain-containing protein.	0.999
BN1708_000260	BN1708_017378	A0A0G4KFZ8	A0A0G4L023	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Thiolase_N domain-containing protein.	0.984
BN1708_000260	BN1708_017793	A0A0G4KFZ8	A0A0G4LE27	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.726
BN1708_001521	BN1708_000260	A0A0G4MYK4	A0A0G4KFZ8	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.999
BN1708_001521	BN1708_002078	A0A0G4MYK4	A0A0G4KH20	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.962
BN1708_001521	BN1708_003245	A0A0G4MYK4	A0A0G4LD50	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.980
BN1708_001521	BN1708_007811	A0A0G4MYK4	A0A0G4LSL8	Ubiquitin-like domain-containing protein.	AN1-type domain-containing protein.	0.962
BN1708_001521	BN1708_017378	A0A0G4MYK4	A0A0G4L023	Ubiquitin-like domain-containing protein.	Thiolase_N domain-containing protein.	0.999
BN1708_001521	BN1708_017793	A0A0G4MYK4	A0A0G4LE27	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.802
BN1708_002078	BN1708_000260	A0A0G4KH20	A0A0G4KFZ8	Ubiquitin-like domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.999
BN1708_002078	BN1708_001521	A0A0G4KH20	A0A0G4MYK4	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.962
BN1708_002078	BN1708_003338	A0A0G4KH20	A0A0G4LG00	Ubiquitin-like domain-containing protein.	CIA30 domain-containing protein.	0.962
BN1708_002078	BN1708_008335	A0A0G4KH20	A0A0G4N2R8	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.962

page 1 of 4

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About