STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_003204Uncharacterized protein. (302 aa)    
Predicted Functional Partners:
BN1708_015095
Uncharacterized protein.
     
 0.920
BN1708_018141
Uncharacterized protein.
   
 0.903
BN1708_018240
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 0.812
BN1708_010519
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 0.812
BN1708_012450
Uncharacterized protein.
    
 0.799
BN1708_011124
Uncharacterized protein.
    
 0.799
BN1708_014813
Hydrolase_4 domain-containing protein.
    
 0.789
BN1708_018488
Uncharacterized protein; Belongs to the TCP-1 chaperonin family.
    
  0.772
BN1708_006058
Helo_like_N domain-containing protein.
     
 0.759
BN1708_000441
Uncharacterized protein.
    
 0.758
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.