STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_018038WW domain-containing protein. (147 aa)    
Predicted Functional Partners:
BN1708_002291
Histone H3; Belongs to the histone H3 family.
   
 0.983
BN1708_004017
Histone domain-containing protein.
   
 0.983
BN1708_001905
Uncharacterized protein.
   
 
 0.958
BN1708_005869
Uncharacterized protein.
   
 
 0.958
BN1708_004454
SET domain-containing protein.
   
 
 0.954
BN1708_000131
Histone H2A; Belongs to the histone H2A family.
    
 0.953
BN1708_016293
Vps16_C domain-containing protein.
   
 0.951
BN1708_001349
Histone-lysine N-methyltransferase, H3 lysine-79 specific; Histone methyltransferase that specifically methylates histone H3 to form H3K79me. This methylation is required for telomere silencing and for the pachytene checkpoint during the meiotic cell cycle by allowing the recruitment of RAD9 to double strand breaks. Nucleosomes are preferred as substrate compared to free histones.
   
 0.951
BN1708_018920
SET domain-containing protein.
   
 0.938
BN1708_005720
Uncharacterized protein.
   
 0.938
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.