STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_014593Uncharacterized protein. (324 aa)    
Predicted Functional Partners:
BN1708_012166
Uncharacterized protein.
   
 0.772
BN1708_000260
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.740
BN1708_017378
Thiolase_N domain-containing protein.
  
 
 0.740
BN1708_011671
Uncharacterized protein.
  
 
 0.725
BN1708_019613
TPP_enzyme_C domain-containing protein.
  
 
 0.725
BN1708_007835
Uncharacterized protein.
 
   
 0.678
BN1708_002532
ADH_zinc_N domain-containing protein.
     
 0.647
BN1708_013600
PKS_ER domain-containing protein.
     
 0.647
BN1708_011784
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.640
BN1708_000321
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.640
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.