BN1708_000616 protein (Verticillium longisporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN1708_000616

Uncharacterized protein. (91 aa)

Predicted Functional Partners:

BN1708_011128

0.812

BN1708_017433

0.812

BN1708_012077

0.812

BN1708_013784

0.812

BN1708_013786

0.812

BN1708_003936

0.812

BN1708_015282

0.812

BN1708_015283

0.812

BN1708_019633

0.812

BN1708_009425

0.712

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_000616	BN1708_003936	A0A0G4LXQ7	A0A0G4LS35	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.812
BN1708_000616	BN1708_009425	A0A0G4LXQ7	A0A0G4KGH2	Uncharacterized protein.	Uncharacterized protein.	0.712
BN1708_000616	BN1708_011128	A0A0G4LXQ7	A0A0G4KWV3	Uncharacterized protein.	Uncharacterized protein.	0.812
BN1708_000616	BN1708_012077	A0A0G4LXQ7	A0A0G4L681	Uncharacterized protein.	AAA domain-containing protein.	0.812
BN1708_000616	BN1708_013784	A0A0G4LXQ7	A0A0G4LNU8	Uncharacterized protein.	Uncharacterized protein.	0.812
BN1708_000616	BN1708_013786	A0A0G4LXQ7	A0A0G4LP29	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.812
BN1708_000616	BN1708_015282	A0A0G4LXQ7	A0A0G4M2Y4	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.812
BN1708_000616	BN1708_015283	A0A0G4LXQ7	A0A0G4M406	Uncharacterized protein.	CDC48_N domain-containing protein.	0.812
BN1708_000616	BN1708_017433	A0A0G4LXQ7	A0A0G4L2H1	Uncharacterized protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.812
BN1708_000616	BN1708_019633	A0A0G4LXQ7	A0A0G4MKN5	Uncharacterized protein.	Uncharacterized protein.	0.812
BN1708_003936	BN1708_000616	A0A0G4LS35	A0A0G4LXQ7	ATPase_AAA_core domain-containing protein.	Uncharacterized protein.	0.812
BN1708_009425	BN1708_000616	A0A0G4KGH2	A0A0G4LXQ7	Uncharacterized protein.	Uncharacterized protein.	0.712
BN1708_011128	BN1708_000616	A0A0G4KWV3	A0A0G4LXQ7	Uncharacterized protein.	Uncharacterized protein.	0.812
BN1708_012077	BN1708_000616	A0A0G4L681	A0A0G4LXQ7	AAA domain-containing protein.	Uncharacterized protein.	0.812
BN1708_013784	BN1708_000616	A0A0G4LNU8	A0A0G4LXQ7	Uncharacterized protein.	Uncharacterized protein.	0.812
BN1708_013786	BN1708_000616	A0A0G4LP29	A0A0G4LXQ7	ATPase_AAA_core domain-containing protein.	Uncharacterized protein.	0.812
BN1708_015282	BN1708_000616	A0A0G4M2Y4	A0A0G4LXQ7	Uncharacterized protein; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.812
BN1708_015282	BN1708_015283	A0A0G4M2Y4	A0A0G4M406	Uncharacterized protein; Belongs to the AAA ATPase family.	CDC48_N domain-containing protein.	0.900
BN1708_015283	BN1708_000616	A0A0G4M406	A0A0G4LXQ7	CDC48_N domain-containing protein.	Uncharacterized protein.	0.812
BN1708_015283	BN1708_015282	A0A0G4M406	A0A0G4M2Y4	CDC48_N domain-containing protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.900

page 1 of 2

Server load: low (24%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Neighborhood

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About