STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_014662L-type lectin-like domain-containing protein. (477 aa)    
Predicted Functional Partners:
BN1708_004319
GOLD domain-containing protein.
   
 0.835
BN1708_015418
GOLD domain-containing protein.
   
 0.835
BN1708_014301
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.816
BN1708_007567
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
 0.816
BN1708_013127
t-SNARE coiled-coil homology domain-containing protein.
     
 0.797
BN1708_000586
GOLD domain-containing protein.
   
 0.784
BN1708_018255
GOLD domain-containing protein; Belongs to the EMP24/GP25L family.
   
 0.784
BN1708_013546
V-SNARE coiled-coil homology domain-containing protein.
    
 0.737
BN1708_013543
Longin domain-containing protein; Belongs to the synaptobrevin family.
    
 0.737
BN1708_003333
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
   
 0.730
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.