STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_004448Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (323 aa)    
Predicted Functional Partners:
BN1708_003691
Malate synthase; Belongs to the malate synthase family.
   
  
 0.890
BN1708_003692
Malate synthase; Belongs to the malate synthase family.
   
  
 0.890
BN1708_003341
FBPase domain-containing protein; Belongs to the FBPase class 1 family.
   
  
 0.868
BN1708_019235
Uncharacterized protein.
   
  
 0.868
BN1708_001361
FBPase domain-containing protein; Belongs to the FBPase class 1 family.
   
  
 0.868
BN1708_015509
Isocitrate lyase.
 
 
  
 0.854
BN1708_004668
Isocitrate lyase.
 
 
  
 0.853
BN1708_014440
FBPase domain-containing protein.
   
  
 0.841
BN1708_007247
FBPase domain-containing protein.
   
  
 0.841
BN1708_017427
Uncharacterized protein.
   
  
 0.840
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.