BN1708_004672 protein (Verticillium longisporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN1708_004672

Non-specific serine/threonine protein kinase. (749 aa)

Predicted Functional Partners:

BN1708_015497

0.976

BN1708_006008

0.976

BN1708_010710

0.928

BN1708_010705

0.927

BN1708_017758

0.916

BN1708_001310

0.916

BN1708_001315

0.916

BN1708_001314

0.916

BN1708_010704

0.910

BN1708_000954

0.900

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_000954	BN1708_001310	A0A0G4L4H4	A0A0G4MMZ6	Protein kinase domain-containing protein.	AMPK1_CBM domain-containing protein.	0.772
BN1708_000954	BN1708_001314	A0A0G4L4H4	A0A0G4MND9	Protein kinase domain-containing protein.	AMPKBI domain-containing protein.	0.772
BN1708_000954	BN1708_001315	A0A0G4L4H4	A0A0G4MN01	Protein kinase domain-containing protein.	AMPKBI domain-containing protein.	0.772
BN1708_000954	BN1708_004672	A0A0G4L4H4	A0A0G4M2H0	Protein kinase domain-containing protein.	Non-specific serine/threonine protein kinase.	0.900
BN1708_000954	BN1708_006008	A0A0G4L4H4	A0A0G4MFS9	Protein kinase domain-containing protein.	Uncharacterized protein.	0.894
BN1708_000954	BN1708_010705	A0A0G4L4H4	A0A0G4KT90	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.882
BN1708_000954	BN1708_010710	A0A0G4L4H4	A0A0G4KT96	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.883
BN1708_000954	BN1708_015497	A0A0G4L4H4	A0A0G4M4E5	Protein kinase domain-containing protein.	Rho-GAP domain-containing protein.	0.894
BN1708_000954	BN1708_017758	A0A0G4L4H4	A0A0G4LCZ7	Protein kinase domain-containing protein.	Uncharacterized protein.	0.772
BN1708_001310	BN1708_000954	A0A0G4MMZ6	A0A0G4L4H4	AMPK1_CBM domain-containing protein.	Protein kinase domain-containing protein.	0.772
BN1708_001310	BN1708_001314	A0A0G4MMZ6	A0A0G4MND9	AMPK1_CBM domain-containing protein.	AMPKBI domain-containing protein.	0.933
BN1708_001310	BN1708_004672	A0A0G4MMZ6	A0A0G4M2H0	AMPK1_CBM domain-containing protein.	Non-specific serine/threonine protein kinase.	0.916
BN1708_001310	BN1708_006008	A0A0G4MMZ6	A0A0G4MFS9	AMPK1_CBM domain-containing protein.	Uncharacterized protein.	0.986
BN1708_001310	BN1708_010704	A0A0G4MMZ6	A0A0G4KT77	AMPK1_CBM domain-containing protein.	Uncharacterized protein.	0.760
BN1708_001310	BN1708_010705	A0A0G4MMZ6	A0A0G4KT90	AMPK1_CBM domain-containing protein.	Protein kinase domain-containing protein.	0.760
BN1708_001310	BN1708_010710	A0A0G4MMZ6	A0A0G4KT96	AMPK1_CBM domain-containing protein.	Protein kinase domain-containing protein.	0.760
BN1708_001310	BN1708_015497	A0A0G4MMZ6	A0A0G4M4E5	AMPK1_CBM domain-containing protein.	Rho-GAP domain-containing protein.	0.986
BN1708_001314	BN1708_000954	A0A0G4MND9	A0A0G4L4H4	AMPKBI domain-containing protein.	Protein kinase domain-containing protein.	0.772
BN1708_001314	BN1708_001310	A0A0G4MND9	A0A0G4MMZ6	AMPKBI domain-containing protein.	AMPK1_CBM domain-containing protein.	0.933
BN1708_001314	BN1708_004672	A0A0G4MND9	A0A0G4M2H0	AMPKBI domain-containing protein.	Non-specific serine/threonine protein kinase.	0.916

page 1 of 5

Network Stats

number of nodes:

3

number of edges:

3

average node degree:

2

avg. local clustering coefficient:

1

expected number of edges:

2

PPI enrichment p-value:

0.211

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:37756079

(2023) Conserved Domains in Variable Surface Lipoproteins A-G of Mycoplasma hyorhinis May Serve as Probable Multi-Epitope Candidate Vaccine: Computational Reverse Vaccinology Approach.

3 of 5

2.14

3.09

5.49e-05

PMID:27738034

(2016) Genome Sequence of Mycoplasma hyorhinis Isolated from Cell Cultures.

3 of 5

2.14

3.09

5.49e-05

PMID:23405353

(2013) Complete Genome Sequence of Mycoplasma hyorhinis Strain SK76.

3 of 5

2.14

3.09

5.49e-05

PMID:31589633

(2019) Early detection and differential serodiagnosis of Mycoplasma hyorhinis and Mycoplasma hyosynoviae infections under experimental conditions.

3 of 7

2.0

2.9

5.49e-05

PMID:31324222

(2019) Tn-sequencing of Mycoplasma hyopneumoniae and Mycoplasma hyorhinis mutant libraries reveals non-essential genes of porcine mycoplasmas differing in pathogenicity.

3 of 14

1.7

2.25

0.00013

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0449

Lipoprotein

3 of 17

1.61

1.64

0.0021

KW-0732

Signal

3 of 36

1.29

1.07

0.0084

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (22%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2024

Credits

Access

Info

About