STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_015391WD_REPEATS_REGION domain-containing protein. (77 aa)    
Predicted Functional Partners:
BN1708_002426
Small nuclear ribonucleoprotein Sm D2.
   
 0.997
BN1708_019174
Helicase C-terminal domain-containing protein.
    
 0.997
BN1708_008532
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.995
BN1708_009990
Tr-type G domain-containing protein.
   
 0.993
BN1708_010475
Tr-type G domain-containing protein.
   
 0.993
BN1708_016289
Sin3a_C domain-containing protein.
   
 0.987
BN1708_001500
Sm domain-containing protein.
   
  0.987
BN1708_001498
Sm domain-containing protein.
   
  0.987
BN1708_000608
PRP1_N domain-containing protein.
   
 0.986
BN1708_000610
Uncharacterized protein.
   
 0.986
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.