BN1708_015731 protein (Verticillium longisporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN1708_015731

Dihydroorotate dehydrogenase (fumarate); Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. (352 aa)

Predicted Functional Partners:

BN1708_018332

0.975

BN1708_017794

0.972

BN1708_006518

0.972

BN1708_006524

0.972

BN1708_000269

0.971

BN1708_002112

0.971

BN1708_002631

0.969

BN1708_002630

0.969

BN1708_020083

0.969

BN1708_009888

0.942

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_000269	BN1708_002630	A0A0G4KDW2	A0A0G4KXF4	Uncharacterized protein.	OMPdecase domain-containing protein.	0.962
BN1708_000269	BN1708_002631	A0A0G4KDW2	A0A0G4KX70	Uncharacterized protein.	OMPdecase domain-containing protein.	0.962
BN1708_000269	BN1708_006518	A0A0G4KDW2	A0A0G4MKI9	Uncharacterized protein.	Uncharacterized protein.	0.530
BN1708_000269	BN1708_006524	A0A0G4KDW2	A0A0G4ML68	Uncharacterized protein.	Uncharacterized protein.	0.530
BN1708_000269	BN1708_009888	A0A0G4KDW2	A0A0G4KLV6	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.947
BN1708_000269	BN1708_015731	A0A0G4KDW2	A0A0G4M6X3	Uncharacterized protein.	Dihydroorotate dehydrogenase (fumarate); Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.	0.971
BN1708_000269	BN1708_017794	A0A0G4KDW2	A0A0G4LE66	Uncharacterized protein.	Uncharacterized protein.	0.530
BN1708_000269	BN1708_018332	A0A0G4KDW2	A0A0G4M1B1	Uncharacterized protein.	Uncharacterized protein.	0.962
BN1708_000269	BN1708_020083	A0A0G4KDW2	A0A0G4MRF2	Uncharacterized protein.	OMPdecase domain-containing protein.	0.962
BN1708_002112	BN1708_002630	A0A0G4L987	A0A0G4KXF4	Uncharacterized protein.	OMPdecase domain-containing protein.	0.962
BN1708_002112	BN1708_002631	A0A0G4L987	A0A0G4KX70	Uncharacterized protein.	OMPdecase domain-containing protein.	0.962
BN1708_002112	BN1708_006518	A0A0G4L987	A0A0G4MKI9	Uncharacterized protein.	Uncharacterized protein.	0.530
BN1708_002112	BN1708_006524	A0A0G4L987	A0A0G4ML68	Uncharacterized protein.	Uncharacterized protein.	0.530
BN1708_002112	BN1708_009888	A0A0G4L987	A0A0G4KLV6	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.947
BN1708_002112	BN1708_015731	A0A0G4L987	A0A0G4M6X3	Uncharacterized protein.	Dihydroorotate dehydrogenase (fumarate); Catalyzes the conversion of dihydroorotate to orotate with fumarate as the electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.	0.971
BN1708_002112	BN1708_017794	A0A0G4L987	A0A0G4LE66	Uncharacterized protein.	Uncharacterized protein.	0.530
BN1708_002112	BN1708_018332	A0A0G4L987	A0A0G4M1B1	Uncharacterized protein.	Uncharacterized protein.	0.962
BN1708_002112	BN1708_020083	A0A0G4L987	A0A0G4MRF2	Uncharacterized protein.	OMPdecase domain-containing protein.	0.962
BN1708_002630	BN1708_000269	A0A0G4KXF4	A0A0G4KDW2	OMPdecase domain-containing protein.	Uncharacterized protein.	0.962
BN1708_002630	BN1708_002112	A0A0G4KXF4	A0A0G4L987	OMPdecase domain-containing protein.	Uncharacterized protein.	0.962

page 1 of 5

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About