BN1708_015738 protein (Verticillium longisporum)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

BN1708_015738

Uncharacterized protein; Belongs to the GST superfamily. (1140 aa)

Predicted Functional Partners:

BN1708_010426

0.983

BN1708_004314

0.892

BN1708_019454

0.892

BN1708_001062

0.854

BN1708_011612

0.847

BN1708_003485

0.847

BN1708_020606

0.847

BN1708_013092

0.833

BN1708_014161

0.817

BN1708_007843

0.791

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_001062	BN1708_003485	A0A0G4MGH8	A0A0G4LJQ1	Uncharacterized protein; Belongs to the GST superfamily.	Uncharacterized protein.	0.895
BN1708_001062	BN1708_004314	A0A0G4MGH8	A0A0G4LYL4	Uncharacterized protein; Belongs to the GST superfamily.	Uncharacterized protein; Belongs to the EF-1-beta/EF-1-delta family.	0.892
BN1708_001062	BN1708_007843	A0A0G4MGH8	A0A0G4MWQ0	Uncharacterized protein; Belongs to the GST superfamily.	Thioredoxin domain-containing protein.	0.872
BN1708_001062	BN1708_010426	A0A0G4MGH8	A0A0G4KR86	Uncharacterized protein; Belongs to the GST superfamily.	ProRS-C_1 domain-containing protein.	0.983
BN1708_001062	BN1708_011612	A0A0G4MGH8	A0A0G4L1M5	Uncharacterized protein; Belongs to the GST superfamily.	Uncharacterized protein.	0.895
BN1708_001062	BN1708_013092	A0A0G4MGH8	A0A0G4LH84	Uncharacterized protein; Belongs to the GST superfamily.	Pyr_redox_2 domain-containing protein.	0.949
BN1708_001062	BN1708_014161	A0A0G4MGH8	A0A0G4LUB4	Uncharacterized protein; Belongs to the GST superfamily.	1-cysPrx_C domain-containing protein.	0.959
BN1708_001062	BN1708_015738	A0A0G4MGH8	A0A0G4M760	Uncharacterized protein; Belongs to the GST superfamily.	Uncharacterized protein; Belongs to the GST superfamily.	0.854
BN1708_001062	BN1708_019454	A0A0G4MGH8	A0A0G4MJD3	Uncharacterized protein; Belongs to the GST superfamily.	EF-1_beta_acid domain-containing protein.	0.892
BN1708_001062	BN1708_020606	A0A0G4MGH8	A0A0G4MZR9	Uncharacterized protein; Belongs to the GST superfamily.	ABC transporter domain-containing protein.	0.895
BN1708_003485	BN1708_001062	A0A0G4LJQ1	A0A0G4MGH8	Uncharacterized protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.895
BN1708_003485	BN1708_004314	A0A0G4LJQ1	A0A0G4LYL4	Uncharacterized protein.	Uncharacterized protein; Belongs to the EF-1-beta/EF-1-delta family.	0.663
BN1708_003485	BN1708_010426	A0A0G4LJQ1	A0A0G4KR86	Uncharacterized protein.	ProRS-C_1 domain-containing protein.	0.976
BN1708_003485	BN1708_011612	A0A0G4LJQ1	A0A0G4L1M5	Uncharacterized protein.	Uncharacterized protein.	0.989
BN1708_003485	BN1708_015738	A0A0G4LJQ1	A0A0G4M760	Uncharacterized protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.847
BN1708_003485	BN1708_019454	A0A0G4LJQ1	A0A0G4MJD3	Uncharacterized protein.	EF-1_beta_acid domain-containing protein.	0.663
BN1708_003485	BN1708_020606	A0A0G4LJQ1	A0A0G4MZR9	Uncharacterized protein.	ABC transporter domain-containing protein.	0.989
BN1708_004314	BN1708_001062	A0A0G4LYL4	A0A0G4MGH8	Uncharacterized protein; Belongs to the EF-1-beta/EF-1-delta family.	Uncharacterized protein; Belongs to the GST superfamily.	0.892
BN1708_004314	BN1708_003485	A0A0G4LYL4	A0A0G4LJQ1	Uncharacterized protein; Belongs to the EF-1-beta/EF-1-delta family.	Uncharacterized protein.	0.663
BN1708_004314	BN1708_010426	A0A0G4LYL4	A0A0G4KR86	Uncharacterized protein; Belongs to the EF-1-beta/EF-1-delta family.	ProRS-C_1 domain-containing protein.	0.563

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

41

average node degree:

7.45

avg. local clustering coefficient:

0.83

expected number of edges:

10

PPI enrichment p-value:

2.73e-13

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:7730

Mixed, incl. Domain of unknown function DUF4266, and Protein of unknown function DUF3570

5 of 13

2.37

3.7

4.89e-08

CL:7746

Mixed, incl. Domain of unknown function DUF4266, and Protein of unknown function DUF3570

4 of 5

2.69

3.55

2.32e-07

CL:5405

Mostly uncharacterized, incl. AAA ATPase domain, and Lipopolysaccharide metabolic process

5 of 68

1.65

2.0

1.37e-05

CL:5498

Mixed, incl. RHS Repeat, and Peptidase S1A, chymotrypsin family

3 of 12

2.18

1.97

0.00015

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF14086

Domain of unknown function (DUF4266)

2 of 2

2.79

1.07

0.0117

PF12256

Insecticide toxin TcdB middle/N-terminal region

2 of 3

2.61

1.06

0.0117

PF05593

RHS Repeat

2 of 3

2.61

1.06

0.0117

PF03534

Salmonella virulence plasmid 65kDa B protein

2 of 3

2.61

1.06

0.0117

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR025362

Domain of unknown function DUF4266

2 of 2

2.79

0.85

0.0294

IPR031325

RHS repeat

2 of 3

2.61

0.84

0.0294

IPR022385

Rhs repeat-associated core

2 of 5

2.39

0.84

0.0294

IPR022045

Insecticide toxin TcdB middle/N-terminal

2 of 3

2.61

0.84

0.0294

IPR006530

YD repeat

2 of 5

2.39

0.84

0.0294

(more ...)

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