BN1708_018555 protein (Verticillium longisporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN1708_018555

Uncharacterized protein. (275 aa)

Predicted Functional Partners:

BN1708_019286

0.922

BN1708_018814

0.900

BN1708_016561

0.857

BN1708_017685

0.555

BN1708_015756

0.555

BN1708_007287

0.555

BN1708_005919

0.550

BN1708_016689

0.550

BN1708_013522

0.533

BN1708_018543

0.533

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_005919	BN1708_007287	A0A0G4MF44	A0A0G4MS42	J domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.447
BN1708_005919	BN1708_015756	A0A0G4MF44	A0A0G4M750	J domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.447
BN1708_005919	BN1708_016561	A0A0G4MF44	A0A0G4MRR5	J domain-containing protein.	Uncharacterized protein.	0.550
BN1708_005919	BN1708_017685	A0A0G4MF44	A0A0G4L9C8	J domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.447
BN1708_005919	BN1708_018555	A0A0G4MF44	A0A0G4M8Y6	J domain-containing protein.	Uncharacterized protein.	0.550
BN1708_005919	BN1708_018814	A0A0G4MF44	A0A0G4MCJ0	J domain-containing protein.	KH domain-containing protein.	0.550
BN1708_005919	BN1708_019286	A0A0G4MF44	A0A0G4MHE3	J domain-containing protein.	Uncharacterized protein.	0.550
BN1708_007287	BN1708_005919	A0A0G4MS42	A0A0G4MF44	WD_REPEATS_REGION domain-containing protein.	J domain-containing protein.	0.447
BN1708_007287	BN1708_013522	A0A0G4MS42	A0A0G4LLL3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.941
BN1708_007287	BN1708_016561	A0A0G4MS42	A0A0G4MRR5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.555
BN1708_007287	BN1708_016689	A0A0G4MS42	A0A0G4MXH7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.447
BN1708_007287	BN1708_018543	A0A0G4MS42	A0A0G4M8T9	WD_REPEATS_REGION domain-containing protein.	EF-1-gamma C-terminal domain-containing protein.	0.941
BN1708_007287	BN1708_018555	A0A0G4MS42	A0A0G4M8Y6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.555
BN1708_007287	BN1708_018814	A0A0G4MS42	A0A0G4MCJ0	WD_REPEATS_REGION domain-containing protein.	KH domain-containing protein.	0.555
BN1708_007287	BN1708_019286	A0A0G4MS42	A0A0G4MHE3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.555
BN1708_013522	BN1708_007287	A0A0G4LLL3	A0A0G4MS42	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.941
BN1708_013522	BN1708_015756	A0A0G4LLL3	A0A0G4M750	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.941
BN1708_013522	BN1708_016561	A0A0G4LLL3	A0A0G4MRR5	Uncharacterized protein.	Uncharacterized protein.	0.533
BN1708_013522	BN1708_017685	A0A0G4LLL3	A0A0G4L9C8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.941
BN1708_013522	BN1708_018543	A0A0G4LLL3	A0A0G4M8T9	Uncharacterized protein.	EF-1-gamma C-terminal domain-containing protein.	0.993

page 1 of 5

Server load: low (24%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2024

Credits

Access

Info

About