BN1708_015800 protein (Verticillium longisporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN1708_015800

Uncharacterized protein. (113 aa)

Predicted Functional Partners:

BN1708_016973

0.871

BN1708_007351

0.871

BN1708_018470

0.806

BN1708_005603

0.806

BN1708_006535

0.806

BN1708_001209

0.787

BN1708_009080

0.775

BN1708_011538

0.775

BN1708_017575

0.775

BN1708_017523

0.735

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_001209	BN1708_005603	A0A0G4MMM8	A0A0G4MDD7	Uncharacterized protein.	Uncharacterized protein.	0.873
BN1708_001209	BN1708_006535	A0A0G4MMM8	A0A0G4MKS3	Uncharacterized protein.	TruB_N domain-containing protein.	0.873
BN1708_001209	BN1708_009080	A0A0G4MMM8	A0A0G4KF12	Uncharacterized protein.	PUA domain-containing protein.	0.950
BN1708_001209	BN1708_011538	A0A0G4MMM8	A0A0G4L179	Uncharacterized protein.	PUA domain-containing protein.	0.950
BN1708_001209	BN1708_015800	A0A0G4MMM8	A0A0G4M9G2	Uncharacterized protein.	Uncharacterized protein.	0.787
BN1708_001209	BN1708_017523	A0A0G4MMM8	A0A0G4L4J7	Uncharacterized protein.	RPOLD domain-containing protein.	0.439
BN1708_001209	BN1708_017575	A0A0G4MMM8	A0A0G4L634	Uncharacterized protein.	Uncharacterized protein.	0.950
BN1708_001209	BN1708_018470	A0A0G4MMM8	A0A0G4M7G7	Uncharacterized protein.	TruB_N domain-containing protein.	0.873
BN1708_005603	BN1708_001209	A0A0G4MDD7	A0A0G4MMM8	Uncharacterized protein.	Uncharacterized protein.	0.873
BN1708_005603	BN1708_007351	A0A0G4MDD7	A0A0G4MQH1	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.688
BN1708_005603	BN1708_015800	A0A0G4MDD7	A0A0G4M9G2	Uncharacterized protein.	Uncharacterized protein.	0.806
BN1708_005603	BN1708_016973	A0A0G4MDD7	A0A0G4KDP5	Uncharacterized protein.	Uncharacterized protein.	0.688
BN1708_005603	BN1708_017523	A0A0G4MDD7	A0A0G4L4J7	Uncharacterized protein.	RPOLD domain-containing protein.	0.614
BN1708_006535	BN1708_001209	A0A0G4MKS3	A0A0G4MMM8	TruB_N domain-containing protein.	Uncharacterized protein.	0.873
BN1708_006535	BN1708_007351	A0A0G4MKS3	A0A0G4MQH1	TruB_N domain-containing protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.688
BN1708_006535	BN1708_015800	A0A0G4MKS3	A0A0G4M9G2	TruB_N domain-containing protein.	Uncharacterized protein.	0.806
BN1708_006535	BN1708_016973	A0A0G4MKS3	A0A0G4KDP5	TruB_N domain-containing protein.	Uncharacterized protein.	0.688
BN1708_006535	BN1708_017523	A0A0G4MKS3	A0A0G4L4J7	TruB_N domain-containing protein.	RPOLD domain-containing protein.	0.614
BN1708_007351	BN1708_005603	A0A0G4MQH1	A0A0G4MDD7	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.688
BN1708_007351	BN1708_006535	A0A0G4MQH1	A0A0G4MKS3	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	TruB_N domain-containing protein.	0.688

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

29

average node degree:

5.27

avg. local clustering coefficient:

0.697

expected number of edges:

20

PPI enrichment p-value:

0.0273

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 291

1.77

4.68

1.53e-16

GO:0032543

Mitochondrial translation

4 of 44

2.15

2.72

3.24e-06

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

11 of 161

2.02

6.66

1.19e-19

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005761

Mitochondrial ribosome

11 of 63

2.43

10.19

3.69e-24

GO:0005762

Mitochondrial large ribosomal subunit

7 of 36

2.48

6.72

1.42e-14

GO:0044391

Ribosomal subunit

10 of 144

2.03

6.33

4.58e-18

GO:0098798

Mitochondrial protein-containing complex

10 of 173

1.95

5.77

2.25e-17

GO:0005763

Mitochondrial small ribosomal subunit

3 of 24

2.29

2.38

2.53e-05

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:8399

Organellar ribosome

11 of 44

2.59

11.36

2.64e-25

CL:8469

Mixed, incl. Ribosomal protein L23, and Ribosomal protein L30p/L7e

5 of 6

3.11

6.4

1.58e-12

CL:8400

Organellar ribosome

6 of 34

2.44

5.58

4.39e-12

CL:8405

Organellar large ribosomal subunit

4 of 15

2.62

3.97

2.95e-08

CL:8409

Mixed, incl. Ribosomal protein L6, and Ribosomal protein L2

2 of 5

2.79

1.76

0.00062

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

8 of 178

1.84

4.14

4.10e-12

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-72766

Translation

11 of 274

1.79

4.95

2.18e-17

MAP-392499

Metabolism of proteins

11 of 1159

1.17

1.74

7.07e-11

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005761

Mitochondrial ribosome

11 of 62

2.44

10.22

3.88e-24

GOCC:0005762

Mitochondrial large ribosomal subunit

8 of 35

2.55

8.09

1.86e-17

GOCC:0044391

Ribosomal subunit

11 of 145

2.07

7.21

6.34e-21

GOCC:0098798

Mitochondrial protein complex

11 of 154

2.04

7.01

9.59e-21

GOCC:0005763

Mitochondrial small ribosomal subunit

3 of 27

2.24

2.3

3.39e-05

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

5 of 107

1.86

2.61

1.17e-06

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