STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_016259Zn(2)-C6 fungal-type domain-containing protein. (946 aa)    
Predicted Functional Partners:
BN1708_002426
Small nuclear ribonucleoprotein Sm D2.
    
 0.572
BN1708_017473
ERCC4 domain-containing protein.
    
 0.568
BN1708_008767
ERCC4 domain-containing protein.
    
 0.568
BN1708_002395
Uncharacterized protein.
    
 0.566
BN1708_002378
Uncharacterized protein.
    
 0.566
BN1708_002149
Sm domain-containing protein.
    
  0.526
BN1708_002182
Small nuclear ribonucleoprotein G.
    
  0.526
BN1708_015450
WD_REPEATS_REGION domain-containing protein.
    
  0.514
BN1708_005627
WD_REPEATS_REGION domain-containing protein.
    
  0.514
BN1708_004245
ERCC4 domain-containing protein.
    
 0.511
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.