STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_019595Peptide hydrolase; Belongs to the peptidase M28 family. (123 aa)    
Predicted Functional Partners:
BN1708_003708
Uncharacterized protein.
    
 
 0.626
BN1708_013203
E3 ubiquitin-protein ligase.
    
 0.510
BN1708_004190
E3 ubiquitin-protein ligase.
    
 0.510
BN1708_013429
B30.2/SPRY domain-containing protein.
    
 
 0.473
BN1708_004418
B30.2/SPRY domain-containing protein.
    
 
 0.473
BN1708_007477
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.436
BN1708_011373
Hcy-binding domain-containing protein.
     
 0.424
BN1708_008974
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.410
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.