STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_006647PX domain-containing protein. (966 aa)    
Predicted Functional Partners:
BN1708_016940
Uncharacterized protein.
 
     0.856
BN1708_017746
FAD_binding_2 domain-containing protein.
 
      0.766
BN1708_009930
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.681
BN1708_016167
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.681
BN1708_014115
SAM_MT_TRM5_TYW2 domain-containing protein.
 
      0.672
BN1708_006644
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
 
      0.661
BN1708_016583
Uncharacterized protein.
 
      0.660
BN1708_010085
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
  0.603
BN1708_002346
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.602
BN1708_002334
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.602
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.