STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_006688NodB homology domain-containing protein. (425 aa)    
Predicted Functional Partners:
BN1708_003366
Tubulin_C domain-containing protein.
    
 0.910
BN1708_019347
Tubulin_C domain-containing protein.
    
 0.910
BN1708_012549
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.671
BN1708_012778
Uncharacterized protein.
    
 0.653
BN1708_004811
Uncharacterized protein.
    
  0.643
BN1708_003684
Uncharacterized protein.
    
 0.636
BN1708_013840
Uncharacterized protein.
    
 0.636
BN1708_002308
MHYT domain-containing protein.
    
 0.632
BN1708_002313
MHYT domain-containing protein.
    
 0.632
BN1708_002306
Uncharacterized protein.
    
 0.632
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.