STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_001326Uncharacterized protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (3378 aa)    
Predicted Functional Partners:
BN1708_011920
MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.
    
 0.979
BN1708_015855
MHD domain-containing protein.
    
 0.979
BN1708_008974
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
 0.978
BN1708_001882
WD_REPEATS_REGION domain-containing protein.
   
 0.831
BN1708_017895
Uncharacterized protein.
   
 0.817
BN1708_001388
Uncharacterized protein.
    
 0.816
BN1708_005472
Uncharacterized protein.
   
  0.803
BN1708_017638
Cnd1 domain-containing protein.
    
  0.796
BN1708_012386
Adaptin_N domain-containing protein.
    
  0.796
BN1708_012848
AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.
    
  0.796
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.