STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_007442Epimerase domain-containing protein. (346 aa)    
Predicted Functional Partners:
BN1708_004082
Ribosomal_S10 domain-containing protein.
   
  0.965
BN1708_005221
Uncharacterized protein.
   
 0.963
BN1708_001520
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 0.941
BN1708_009343
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
   
  0.935
BN1708_007284
Ribosomal_L19e domain-containing protein.
   
   0.918
BN1708_005127
Uncharacterized protein.
   
 
 0.911
BN1708_019341
Ribosomal_L16 domain-containing protein.
   
   0.878
BN1708_002106
S10_plectin domain-containing protein.
   
 0.870
BN1708_015123
S10_plectin domain-containing protein.
   
 0.870
BN1708_011929
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
  
   0.866
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.