BN1708_016699 protein (Verticillium longisporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BN1708_016699

Dopey_N domain-containing protein. (578 aa)

Predicted Functional Partners:

BN1708_010210

0.960

BN1708_014894

0.960

BN1708_016701

0.942

BN1708_008525

0.903

BN1708_001247

0.548

BN1708_015521

0.462

BN1708_001239

0.462

BN1708_001237

0.462

BN1708_001236

0.462

BN1708_001244

0.458

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_001236	BN1708_001244	A0A0G4MNE5	A0A0G4MN28	Uncharacterized protein.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.478
BN1708_001236	BN1708_001247	A0A0G4MNE5	A0A0G4MN78	Uncharacterized protein.	Uncharacterized protein.	0.478
BN1708_001236	BN1708_016699	A0A0G4MNE5	A0A0G4MXU1	Uncharacterized protein.	Dopey_N domain-containing protein.	0.462
BN1708_001236	BN1708_016701	A0A0G4MNE5	A0A0G4MY65	Uncharacterized protein.	Uncharacterized protein.	0.462
BN1708_001237	BN1708_001244	A0A0G4MMY6	A0A0G4MN28	Uncharacterized protein.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.478
BN1708_001237	BN1708_001247	A0A0G4MMY6	A0A0G4MN78	Uncharacterized protein.	Uncharacterized protein.	0.478
BN1708_001237	BN1708_016699	A0A0G4MMY6	A0A0G4MXU1	Uncharacterized protein.	Dopey_N domain-containing protein.	0.462
BN1708_001237	BN1708_016701	A0A0G4MMY6	A0A0G4MY65	Uncharacterized protein.	Uncharacterized protein.	0.462
BN1708_001239	BN1708_001244	A0A0G4MMQ8	A0A0G4MN28	Uncharacterized protein.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.478
BN1708_001239	BN1708_001247	A0A0G4MMQ8	A0A0G4MN78	Uncharacterized protein.	Uncharacterized protein.	0.478
BN1708_001239	BN1708_016699	A0A0G4MMQ8	A0A0G4MXU1	Uncharacterized protein.	Dopey_N domain-containing protein.	0.462
BN1708_001239	BN1708_016701	A0A0G4MMQ8	A0A0G4MY65	Uncharacterized protein.	Uncharacterized protein.	0.462
BN1708_001244	BN1708_001236	A0A0G4MN28	A0A0G4MNE5	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.478
BN1708_001244	BN1708_001237	A0A0G4MN28	A0A0G4MMY6	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.478
BN1708_001244	BN1708_001239	A0A0G4MN28	A0A0G4MMQ8	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.478
BN1708_001244	BN1708_010210	A0A0G4MN28	A0A0G4KPF6	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.630
BN1708_001244	BN1708_014894	A0A0G4MN28	A0A0G4M074	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.630
BN1708_001244	BN1708_015521	A0A0G4MN28	A0A0G4M4R0	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.478
BN1708_001244	BN1708_016699	A0A0G4MN28	A0A0G4MXU1	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Dopey_N domain-containing protein.	0.458
BN1708_001244	BN1708_016701	A0A0G4MN28	A0A0G4MY65	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein.	0.458

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

13

average node degree:

2.36

avg. local clustering coefficient:

0.915

expected number of edges:

10

PPI enrichment p-value:

0.219

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0051536

Iron-sulfur cluster binding

7 of 146

1.1

1.06

0.00017

GO:0018492

Carbon-monoxide dehydrogenase (acceptor) activity

2 of 3

2.24

0.92

0.0200

GO:0016491

Oxidoreductase activity

7 of 239

0.89

0.71

0.0015

GO:0046872

Metal ion binding

7 of 405

0.66

0.41

0.0273

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4820

Mixed, incl. Alpha-helical ferredoxin, and Potassium ion transport

10 of 13

2.3

7.81

7.59e-19

CL:4823

Alpha-helical ferredoxin, and Lactate oxidation

5 of 5

2.42

4.03

1.16e-08

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

nth00680

Methane metabolism

5 of 21

1.8

2.48

1.57e-06

nth01200

Carbon metabolism

5 of 89

1.17

1.05

0.00058

nth01120

Microbial metabolism in diverse environments

5 of 138

0.98

0.75

0.0030

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF10418

Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B

2 of 2

2.42

0.79

0.0357

PF00175

Oxidoreductase NAD-binding domain

2 of 2

2.42

0.79

0.0357

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR009051

Alpha-helical ferredoxin

3 of 3

2.42

1.62

0.00096

IPR017900

4Fe-4S ferredoxin, iron-sulphur binding, conserved site

5 of 49

1.43

1.23

0.00096

IPR039261

Ferredoxin-NADP reductase (FNR), nucleotide-binding domain

2 of 2

2.42

0.89

0.0236

IPR037117

Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily

2 of 2

2.42

0.89

0.0236

IPR019480

Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain

2 of 2

2.42

0.89

0.0236

(more ...)

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (18%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Neighborhood

© STRING Consortium 2024

Credits

Access

Info

About