STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1708_008880A_deaminase domain-containing protein. (365 aa)    
Predicted Functional Partners:
BN1708_013732
A_deaminase domain-containing protein.
  
  
  0.934
BN1708_018381
PfkB domain-containing protein.
    
 0.930
BN1708_000822
PfkB domain-containing protein.
    
 0.930
BN1708_000821
Uncharacterized protein.
    
 0.930
BN1708_019043
PfkB domain-containing protein.
    
 0.930
BN1708_003582
Uncharacterized protein.
  
  
 
0.928
BN1708_003584
A_deaminase domain-containing protein.
  
  
 
0.927
BN1708_001909
Uncharacterized protein.
   
 
 0.925
BN1708_001911
IMP-specific 5'-nucleotidase 1; IMP-specific 5'-nucleotidase involved in IMP (inositol monophosphate) degradation.
   
 
 0.925
BN1708_018855
A_deaminase domain-containing protein.
  
  
 
0.925
Your Current Organism:
Verticillium longisporum
NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.