MMYC01_203370 protein (Madurella mycetomatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MMYC01_203370

DNA-directed RNA polymerase subunit beta. (97 aa)

Predicted Functional Partners:

MMYC01_200372

0.934

MMYC01_202300

0.918

MMYC01_208882

0.819

MMYC01_208883

0.819

MMYC01_203001

0.720

MMYC01_202947

0.688

MMYC01_206354

0.655

MMYC01_204754

0.625

MMYC01_204265

0.609

MMYC01_205683

0.543

Your Current Organism:

Madurella mycetomatis

NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMYC01_200372	MMYC01_202300	A0A175WI44	A0A175W832	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.995
MMYC01_200372	MMYC01_202947	A0A175WI44	A0A175WAT4	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.969
MMYC01_200372	MMYC01_203001	A0A175WI44	A0A175W7B7	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	0.748
MMYC01_200372	MMYC01_203370	A0A175WI44	A0A175VPF0	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	DNA-directed RNA polymerase subunit beta.	0.934
MMYC01_200372	MMYC01_204265	A0A175WI44	A0A175W3W6	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Phosphatidylinositol-binding clathrin assembly protein.	0.846
MMYC01_200372	MMYC01_204754	A0A175WI44	A0A175W6G4	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.927
MMYC01_200372	MMYC01_205683	A0A175WI44	A0A175W4H1	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Membrane-anchored ubiquitin-fold protein 1.	0.939
MMYC01_200372	MMYC01_206354	A0A175WI44	A0A175W124	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.999
MMYC01_200372	MMYC01_208882	A0A175WI44	A0A175VSD0	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	AP-3 complex subunit mu-2; Belongs to the adaptor complexes medium subunit family.	0.985
MMYC01_200372	MMYC01_208883	A0A175WI44	A0A175VT60	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	Uncharacterized protein.	0.978
MMYC01_202300	MMYC01_200372	A0A175W832	A0A175WI44	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	0.995
MMYC01_202300	MMYC01_202947	A0A175W832	A0A175WAT4	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.645
MMYC01_202300	MMYC01_203001	A0A175W832	A0A175W7B7	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.	0.702
MMYC01_202300	MMYC01_203370	A0A175W832	A0A175VPF0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	DNA-directed RNA polymerase subunit beta.	0.918
MMYC01_202300	MMYC01_204754	A0A175W832	A0A175W6G4	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.647
MMYC01_202300	MMYC01_205683	A0A175W832	A0A175W4H1	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Membrane-anchored ubiquitin-fold protein 1.	0.660
MMYC01_202300	MMYC01_206354	A0A175W832	A0A175W124	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.643
MMYC01_202300	MMYC01_208882	A0A175W832	A0A175VSD0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-3 complex subunit mu-2; Belongs to the adaptor complexes medium subunit family.	0.950
MMYC01_202300	MMYC01_208883	A0A175W832	A0A175VT60	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.950
MMYC01_202947	MMYC01_200372	A0A175WAT4	A0A175WI44	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	AP-3 complex subunit delta; Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane.	0.969