MMYC01_209012 protein (Madurella mycetomatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MMYC01_209012

Stress-response A/B barrel domain-containing protein. (156 aa)

Predicted Functional Partners:

MMYC01_201507

0.818

MMYC01_210099

0.591

MMYC01_204364

0.567

MMYC01_208132

0.564

MMYC01_207233

0.564

MMYC01_204810

0.564

MMYC01_200594

0.564

MMYC01_209446

0.533

MMYC01_208310

0.533

MMYC01_205516

0.533

Your Current Organism:

Madurella mycetomatis

NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMYC01_200594	MMYC01_201507	A0A175WGY7	A0A175WEK8	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC.	Tryptophan synthase.	0.834
MMYC01_200594	MMYC01_209012	A0A175WGY7	A0A175VR75	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC.	Stress-response A/B barrel domain-containing protein.	0.564
MMYC01_201507	MMYC01_200594	A0A175WEK8	A0A175WGY7	Tryptophan synthase.	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC.	0.834
MMYC01_201507	MMYC01_204364	A0A175WEK8	A0A175W6D5	Tryptophan synthase.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.834
MMYC01_201507	MMYC01_204810	A0A175WEK8	A0A175W6M5	Tryptophan synthase.	DASH complex subunit dad4.	0.834
MMYC01_201507	MMYC01_207233	A0A175WEK8	A0A175VX30	Tryptophan synthase.	DASH complex subunit dad4.	0.834
MMYC01_201507	MMYC01_208132	A0A175WEK8	A0A175VVX3	Tryptophan synthase.	D-amino acid dehydrogenase.	0.834
MMYC01_201507	MMYC01_209012	A0A175WEK8	A0A175VR75	Tryptophan synthase.	Stress-response A/B barrel domain-containing protein.	0.818
MMYC01_204364	MMYC01_201507	A0A175W6D5	A0A175WEK8	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	Tryptophan synthase.	0.834
MMYC01_204364	MMYC01_209012	A0A175W6D5	A0A175VR75	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	Stress-response A/B barrel domain-containing protein.	0.567
MMYC01_204810	MMYC01_201507	A0A175W6M5	A0A175WEK8	DASH complex subunit dad4.	Tryptophan synthase.	0.834
MMYC01_204810	MMYC01_209012	A0A175W6M5	A0A175VR75	DASH complex subunit dad4.	Stress-response A/B barrel domain-containing protein.	0.564
MMYC01_205516	MMYC01_209012	A0A175W2Q1	A0A175VR75	Nitrite reductase [NAD(P)H].	Stress-response A/B barrel domain-containing protein.	0.533
MMYC01_207233	MMYC01_201507	A0A175VX30	A0A175WEK8	DASH complex subunit dad4.	Tryptophan synthase.	0.834
MMYC01_207233	MMYC01_209012	A0A175VX30	A0A175VR75	DASH complex subunit dad4.	Stress-response A/B barrel domain-containing protein.	0.564
MMYC01_208132	MMYC01_201507	A0A175VVX3	A0A175WEK8	D-amino acid dehydrogenase.	Tryptophan synthase.	0.834
MMYC01_208132	MMYC01_209012	A0A175VVX3	A0A175VR75	D-amino acid dehydrogenase.	Stress-response A/B barrel domain-containing protein.	0.564
MMYC01_208310	MMYC01_209012	A0A175VVJ6	A0A175VR75	Apoptosis-inducing factor 1.	Stress-response A/B barrel domain-containing protein.	0.533
MMYC01_209012	MMYC01_200594	A0A175VR75	A0A175WGY7	Stress-response A/B barrel domain-containing protein.	tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC.	0.564
MMYC01_209012	MMYC01_201507	A0A175VR75	A0A175WEK8	Stress-response A/B barrel domain-containing protein.	Tryptophan synthase.	0.818