STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMYC01_209445Uracil phosphoribosyltransferase. (666 aa)    
Predicted Functional Partners:
MMYC01_204248
Nitrate reductase [NADH].
  
  0.844
MMYC01_200978
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
  
  0.844
MMYC01_201346
Acidic repeat-containing protein.
    
 0.679
MMYC01_209545
TATA-box-binding protein.
    
  0.662
MMYC01_208115
TATA-box-binding protein.
    
  0.662
MMYC01_208994
Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily.
    
 0.632
MMYC01_207433
RNA polymerase I-specific transcription initiation factor rrn3.
    
 0.568
MMYC01_201187
Putative DNA repair helicase ercc3.
    
  0.547
MMYC01_207268
Cyclin CCL1; Belongs to the cyclin family.
    
  0.544
MMYC01_205237
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 
  0.525
Your Current Organism:
Madurella mycetomatis
NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis
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