STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMYC01_2095115'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1027 aa)    
Predicted Functional Partners:
MMYC01_204755
Regulation of nuclear pre-mRNA domain-containing protein 1A.
    
 
 0.958
MMYC01_201464
Uncharacterized protein.
 
 
 0.955
MMYC01_209307
Decapping nuclease RAI1.
   
 
 0.927
MMYC01_202470
Decapping nuclease RAI1.
   
 
 0.927
MMYC01_201463
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
  
 
0.927
MMYC01_209510
Neurofibromin.
 
      0.899
MMYC01_210504
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
 
      0.799
MMYC01_202936
Small subunit processome component 20.
   
  0.780
MMYC01_204907
ATP-dependent rRNA helicase RRP3; Belongs to the DEAD box helicase family.
   
 0.778
MMYC01_204735
rRNA biogenesis protein rrp5.
   
 0.763
Your Current Organism:
Madurella mycetomatis
NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.