STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMYC01_208716Protein RTA1. (341 aa)    
Predicted Functional Partners:
MMYC01_210209
3-ketodihydrosphingosine reductase gsl-3.
     
 0.832
MMYC01_206216
Glycosylphosphatidylinositol anchor biosynthesis protein 11.
     
 0.832
MMYC01_206322
Dihydrosphingosine 1-phosphate phosphatase LCB3.
    
 0.685
MMYC01_208742
Sphingolipid C4-hydroxylase sur2; Belongs to the sterol desaturase family.
   
 0.675
MMYC01_205616
Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.
    
 0.648
MMYC01_204318
Inositol phosphosphingolipids phospholipase C.
     
 0.616
MMYC01_204878
Ceramide glucosyltransferase.
     
 0.615
MMYC01_200903
Sphingoid long chain base kinase 4.
     
 0.615
MMYC01_207952
Uncharacterized protein.
     
 0.611
MMYC01_205897
Alkaline ceramidase 3.
    
 0.600
Your Current Organism:
Madurella mycetomatis
NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.