MMYC01_207745 protein (Madurella mycetomatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MMYC01_207745

Mitochondrial distribution and morphology protein 38. (547 aa)

Predicted Functional Partners:

MMYC01_207746

0.779

MMYC01_204287

0.628

MMYC01_202059

0.625

MMYC01_205423

0.624

MMYC01_200946

0.552

MMYC01_206070

0.536

MMYC01_208486

0.535

MMYC01_201837

0.521

MMYC01_202458

0.520

MMYC01_208832

0.514

Your Current Organism:

Madurella mycetomatis

NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMYC01_200946	MMYC01_201837	A0A175WEG1	A0A175WDV5	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
MMYC01_200946	MMYC01_202059	A0A175WEG1	A0A175WB80	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ras-related C3 botulinum toxin substrate 1.	0.460
MMYC01_200946	MMYC01_202458	A0A175WEG1	A0A175WC50	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_L2_C domain-containing protein.	0.989
MMYC01_200946	MMYC01_205423	A0A175WEG1	A0A175W1R3	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.967
MMYC01_200946	MMYC01_206070	A0A175WEG1	A0A175W2C9	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_S10 domain-containing protein.	0.999
MMYC01_200946	MMYC01_207745	A0A175WEG1	A0A175VVR2	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Mitochondrial distribution and morphology protein 38.	0.552
MMYC01_200946	MMYC01_208486	A0A175WEG1	A0A175VRR2	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999
MMYC01_200946	MMYC01_208832	A0A175WEG1	A0A175VQQ8	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Mitochondrial inner membrane protein OXA1.	0.736
MMYC01_201837	MMYC01_200946	A0A175WDV5	A0A175WEG1	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
MMYC01_201837	MMYC01_202458	A0A175WDV5	A0A175WC50	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	Ribosomal_L2_C domain-containing protein.	0.998
MMYC01_201837	MMYC01_205423	A0A175WDV5	A0A175W1R3	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.998
MMYC01_201837	MMYC01_206070	A0A175WDV5	A0A175W2C9	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	Ribosomal_S10 domain-containing protein.	0.999
MMYC01_201837	MMYC01_207745	A0A175WDV5	A0A175VVR2	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	Mitochondrial distribution and morphology protein 38.	0.521
MMYC01_201837	MMYC01_208486	A0A175WDV5	A0A175VRR2	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999
MMYC01_202059	MMYC01_200946	A0A175WB80	A0A175WEG1	Ras-related C3 botulinum toxin substrate 1.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.460
MMYC01_202059	MMYC01_207745	A0A175WB80	A0A175VVR2	Ras-related C3 botulinum toxin substrate 1.	Mitochondrial distribution and morphology protein 38.	0.625
MMYC01_202458	MMYC01_200946	A0A175WC50	A0A175WEG1	Ribosomal_L2_C domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.989
MMYC01_202458	MMYC01_201837	A0A175WC50	A0A175WDV5	Ribosomal_L2_C domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.998
MMYC01_202458	MMYC01_205423	A0A175WC50	A0A175W1R3	Ribosomal_L2_C domain-containing protein.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.999
MMYC01_202458	MMYC01_206070	A0A175WC50	A0A175W2C9	Ribosomal_L2_C domain-containing protein.	Ribosomal_S10 domain-containing protein.	0.999