STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMYC01_205327Valine--tRNA ligase, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family. (1108 aa)    
Predicted Functional Partners:
MMYC01_209009
Leucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.860
MMYC01_202298
Leucine--tRNA ligase, cytoplasmic.
   
 0.860
MMYC01_210613
Elongation factor 1-gamma; Belongs to the GST superfamily.
   
 0.852
MMYC01_210205
Elongation factor 1-gamma; Belongs to the GST superfamily.
   
 0.852
MMYC01_204766
Elongation factor 1-gamma 1.
   
 0.852
MMYC01_206090
Ribosome biogenesis protein RPF2.
 
 
  
 0.784
MMYC01_204266
Aspartate--tRNA(Asp/Asn) ligase.
  
  
 0.754
MMYC01_204267
Aspartate--tRNA ligase, mitochondrial.
  
  
 0.754
MMYC01_209103
Isoleucine--tRNA ligase, cytoplasmic.
  
0.740
MMYC01_202023
Isoleucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.740
Your Current Organism:
Madurella mycetomatis
NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis
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