MMYC01_205590 protein (Madurella mycetomatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MMYC01_205590

Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (119 aa)

Predicted Functional Partners:

MMYC01_200946

0.997

MMYC01_208486

0.995

MMYC01_208147

0.995

MMYC01_209231

0.995

MMYC01_208151

0.995

MMYC01_205388

0.995

MMYC01_206070

0.995

MMYC01_206488

0.995

MMYC01_202287

0.995

MMYC01_202604

0.995

Your Current Organism:

Madurella mycetomatis

NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMYC01_200946	MMYC01_202287	A0A175WEG1	A0A175W811	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
MMYC01_200946	MMYC01_202604	A0A175WEG1	A0A175WA88	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.982
MMYC01_200946	MMYC01_205388	A0A175WEG1	A0A175W0X8	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
MMYC01_200946	MMYC01_205590	A0A175WEG1	A0A175W403	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.997
MMYC01_200946	MMYC01_206070	A0A175WEG1	A0A175W2C9	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_S10 domain-containing protein.	0.999
MMYC01_200946	MMYC01_206488	A0A175WEG1	A0A175W3M8	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.995
MMYC01_200946	MMYC01_208147	A0A175WEG1	A0A175VTZ4	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
MMYC01_200946	MMYC01_208151	A0A175WEG1	A0A175VV65	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.995
MMYC01_200946	MMYC01_208486	A0A175WEG1	A0A175VRR2	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999
MMYC01_200946	MMYC01_209231	A0A175WEG1	A0A175VUW6	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
MMYC01_202287	MMYC01_200946	A0A175W811	A0A175WEG1	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
MMYC01_202287	MMYC01_202604	A0A175W811	A0A175WA88	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
MMYC01_202287	MMYC01_205388	A0A175W811	A0A175W0X8	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
MMYC01_202287	MMYC01_205590	A0A175W811	A0A175W403	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.995
MMYC01_202287	MMYC01_206070	A0A175W811	A0A175W2C9	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Ribosomal_S10 domain-containing protein.	0.999
MMYC01_202287	MMYC01_206488	A0A175W811	A0A175W3M8	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.	0.999
MMYC01_202287	MMYC01_208147	A0A175W811	A0A175VTZ4	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein.	0.999
MMYC01_202287	MMYC01_208151	A0A175W811	A0A175VV65	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.999
MMYC01_202287	MMYC01_208486	A0A175W811	A0A175VRR2	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999
MMYC01_202287	MMYC01_209231	A0A175W811	A0A175VUW6	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein.	0.999