MMYC01_204434 protein (Madurella mycetomatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MMYC01_204434

Presequence protease 1, chloroplastic/mitochondrial. (1058 aa)

Predicted Functional Partners:

MMYC01_209439

0.557

MMYC01_200470

0.557

MMYC01_205048

0.491

MMYC01_202594

0.470

MMYC01_202066

0.463

MMYC01_205842

0.433

MMYC01_208940

0.431

MMYC01_201385

0.430

MMYC01_200049

0.425

MMYC01_205392

0.400

Your Current Organism:

Madurella mycetomatis

NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMYC01_200049	MMYC01_200470	A0A150AS76	A0A175WHX5	T-complex protein 1 subunit epsilon.	Uncharacterized protein.	0.468
MMYC01_200049	MMYC01_201385	A0A150AS76	A0A175WCI9	T-complex protein 1 subunit epsilon.	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	0.446
MMYC01_200049	MMYC01_202066	A0A150AS76	A0A175WBM6	T-complex protein 1 subunit epsilon.	Programmed cell death protein 5.	0.445
MMYC01_200049	MMYC01_202594	A0A150AS76	A0A175WAP0	T-complex protein 1 subunit epsilon.	T-complex protein 1 subunit delta.	0.999
MMYC01_200049	MMYC01_204434	A0A150AS76	A0A175W5P4	T-complex protein 1 subunit epsilon.	Presequence protease 1, chloroplastic/mitochondrial.	0.425
MMYC01_200049	MMYC01_205048	A0A150AS76	A0A175W2L5	T-complex protein 1 subunit epsilon.	Eukaryotic translation initiation factor 2 subunit gamma.	0.679
MMYC01_200049	MMYC01_205392	A0A150AS76	A0A175W079	T-complex protein 1 subunit epsilon.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
MMYC01_200049	MMYC01_208940	A0A150AS76	A0A175VTQ2	T-complex protein 1 subunit epsilon.	Putative T-complex protein 1 subunit beta.	0.999
MMYC01_200049	MMYC01_209439	A0A150AS76	A0A175VR11	T-complex protein 1 subunit epsilon.	Lid2 complex component lid2.	0.468
MMYC01_200470	MMYC01_200049	A0A175WHX5	A0A150AS76	Uncharacterized protein.	T-complex protein 1 subunit epsilon.	0.468
MMYC01_200470	MMYC01_201385	A0A175WHX5	A0A175WCI9	Uncharacterized protein.	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	0.468
MMYC01_200470	MMYC01_202594	A0A175WHX5	A0A175WAP0	Uncharacterized protein.	T-complex protein 1 subunit delta.	0.468
MMYC01_200470	MMYC01_204434	A0A175WHX5	A0A175W5P4	Uncharacterized protein.	Presequence protease 1, chloroplastic/mitochondrial.	0.557
MMYC01_200470	MMYC01_205392	A0A175WHX5	A0A175W079	Uncharacterized protein.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.468
MMYC01_200470	MMYC01_208940	A0A175WHX5	A0A175VTQ2	Uncharacterized protein.	Putative T-complex protein 1 subunit beta.	0.468
MMYC01_201385	MMYC01_200049	A0A175WCI9	A0A150AS76	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	T-complex protein 1 subunit epsilon.	0.446
MMYC01_201385	MMYC01_200470	A0A175WCI9	A0A175WHX5	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	Uncharacterized protein.	0.468
MMYC01_201385	MMYC01_202594	A0A175WCI9	A0A175WAP0	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	T-complex protein 1 subunit delta.	0.471
MMYC01_201385	MMYC01_204434	A0A175WCI9	A0A175W5P4	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	Presequence protease 1, chloroplastic/mitochondrial.	0.430
MMYC01_201385	MMYC01_205392	A0A175WCI9	A0A175W079	Heat shock protein 60; Belongs to the chaperonin (HSP60) family.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.460