STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMYC01_204014Integral membrane protein sed5. (315 aa)    
Predicted Functional Partners:
MMYC01_200038
Protein transport protein sft1.
   
 0.999
MMYC01_203067
Synaptobrevin YKT6; Belongs to the synaptobrevin family.
    
 0.999
MMYC01_200530
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.999
MMYC01_200587
Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex.
   
 0.999
MMYC01_201437
Protein transport protein sec22; Belongs to the synaptobrevin family.
   
 0.998
MMYC01_202235
Protein sly1; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.996
MMYC01_209512
Intracellular protein transport protein USO1.
    
 0.988
MMYC01_207293
Synaptobrevin 1.
    
 0.988
MMYC01_201408
Putative vesicular-fusion protein sec17.
    
 0.983
MMYC01_205748
Syntaxin-6.
    
 0.977
Your Current Organism:
Madurella mycetomatis
NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis
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