STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMYC01_202256Next to BRCA1 gene 1 protein. (840 aa)    
Predicted Functional Partners:
MMYC01_202130
Autophagy-related protein.
   
 0.908
MMYC01_210554
Nitrogen assimilation transcription factor nit-4.
   
 0.853
MMYC01_204254
Nitrogen assimilation transcription factor nirA.
   
 0.853
MMYC01_205387
Ubiquitin-like domain-containing protein.
   
 0.838
MMYC01_208388
Transcription factor TOXE.
   
 0.838
MMYC01_207675
TNF receptor-associated factor 6.
    
 0.832
MMYC01_200969
Ubiquitin-like domain-containing protein.
    
 0.819
MMYC01_209404
Protein BOI2.
   
 0.805
MMYC01_204149
Deubiquitination-protection protein dph1.
   
 0.805
MMYC01_209192
Autophagy protein 5; Involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation.
    
 0.766
Your Current Organism:
Madurella mycetomatis
NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis
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