MMYC01_201450 protein (Madurella mycetomatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MMYC01_201450

Citron Rho-interacting kinase. (1354 aa)

Predicted Functional Partners:

MMYC01_208538

0.539

MMYC01_202381

0.455

MMYC01_202975

0.453

MMYC01_210548

0.437

MMYC01_200748

0.432

MMYC01_205052

0.426

MMYC01_204452

0.426

MMYC01_208387

0.402

MMYC01_202474

0.402

Your Current Organism:

Madurella mycetomatis

NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMYC01_200748	MMYC01_201450	A0A175WG06	A0A175WCB7	Uncharacterized protein.	Citron Rho-interacting kinase.	0.432
MMYC01_201450	MMYC01_200748	A0A175WCB7	A0A175WG06	Citron Rho-interacting kinase.	Uncharacterized protein.	0.432
MMYC01_201450	MMYC01_202381	A0A175WCB7	A0A175W8S0	Citron Rho-interacting kinase.	Chromatin modification-related protein eaf3.	0.455
MMYC01_201450	MMYC01_202474	A0A175WCB7	A0A175WA70	Citron Rho-interacting kinase.	Centromere protein I.	0.402
MMYC01_201450	MMYC01_202975	A0A175WCB7	A0A175WDC1	Citron Rho-interacting kinase.	Uncharacterized protein.	0.453
MMYC01_201450	MMYC01_204452	A0A175WCB7	A0A175W7U2	Citron Rho-interacting kinase.	Uncharacterized protein.	0.426
MMYC01_201450	MMYC01_205052	A0A175WCB7	A0A175W2D6	Citron Rho-interacting kinase.	DNA damage checkpoint protein rad24; Belongs to the 14-3-3 family.	0.426
MMYC01_201450	MMYC01_208387	A0A175WCB7	A0A175W1F8	Citron Rho-interacting kinase.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.402
MMYC01_201450	MMYC01_208538	A0A175WCB7	A0A175W246	Citron Rho-interacting kinase.	Ankyrin repeat, PH and SEC7 domain containing protein secG.	0.539
MMYC01_201450	MMYC01_210548	A0A175WCB7	A0A175VP25	Citron Rho-interacting kinase.	Homeobox protein EgHBX4.	0.437
MMYC01_202381	MMYC01_201450	A0A175W8S0	A0A175WCB7	Chromatin modification-related protein eaf3.	Citron Rho-interacting kinase.	0.455
MMYC01_202474	MMYC01_201450	A0A175WA70	A0A175WCB7	Centromere protein I.	Citron Rho-interacting kinase.	0.402
MMYC01_202474	MMYC01_204452	A0A175WA70	A0A175W7U2	Centromere protein I.	Uncharacterized protein.	0.483
MMYC01_202474	MMYC01_205052	A0A175WA70	A0A175W2D6	Centromere protein I.	DNA damage checkpoint protein rad24; Belongs to the 14-3-3 family.	0.536
MMYC01_202975	MMYC01_201450	A0A175WDC1	A0A175WCB7	Uncharacterized protein.	Citron Rho-interacting kinase.	0.453
MMYC01_202975	MMYC01_210548	A0A175WDC1	A0A175VP25	Uncharacterized protein.	Homeobox protein EgHBX4.	0.488
MMYC01_204452	MMYC01_201450	A0A175W7U2	A0A175WCB7	Uncharacterized protein.	Citron Rho-interacting kinase.	0.426
MMYC01_204452	MMYC01_202474	A0A175W7U2	A0A175WA70	Uncharacterized protein.	Centromere protein I.	0.483
MMYC01_204452	MMYC01_208387	A0A175W7U2	A0A175W1F8	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.483
MMYC01_205052	MMYC01_201450	A0A175W2D6	A0A175WCB7	DNA damage checkpoint protein rad24; Belongs to the 14-3-3 family.	Citron Rho-interacting kinase.	0.426