MMYC01_202514 protein (Madurella mycetomatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MMYC01_202514

Proteasome activator BLM10. (1961 aa)

Predicted Functional Partners:

MMYC01_202357

0.992

MMYC01_201433

0.990

MMYC01_202932

0.985

MMYC01_207495

0.981

MMYC01_210150

0.980

MMYC01_205600

0.977

MMYC01_206607

0.974

MMYC01_206302

0.972

MMYC01_201185

0.972

MMYC01_202615

0.970

Your Current Organism:

Madurella mycetomatis

NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMYC01_201185	MMYC01_201433	A0A175WFZ3	A0A175WCF0	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
MMYC01_201185	MMYC01_202357	A0A175WFZ3	A0A175W860	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
MMYC01_201185	MMYC01_202514	A0A175WFZ3	A0A175WCS9	Proteasome subunit alpha type.	Proteasome activator BLM10.	0.972
MMYC01_201185	MMYC01_202615	A0A175WFZ3	A0A175VZT5	Proteasome subunit alpha type.	Putative proteasome subunit beta type-2.	0.999
MMYC01_201185	MMYC01_202932	A0A175WFZ3	A0A175WB08	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
MMYC01_201185	MMYC01_205600	A0A175WFZ3	A0A175W096	Proteasome subunit alpha type.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.999
MMYC01_201185	MMYC01_206302	A0A175WFZ3	A0A175VX63	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
MMYC01_201185	MMYC01_206607	A0A175WFZ3	A0A175VWG0	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
MMYC01_201185	MMYC01_207495	A0A175WFZ3	A0A175VW30	Proteasome subunit alpha type.	VWFA domain-containing protein.	0.998
MMYC01_201185	MMYC01_210150	A0A175WFZ3	A0A175VNQ0	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
MMYC01_201433	MMYC01_201185	A0A175WCF0	A0A175WFZ3	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
MMYC01_201433	MMYC01_202357	A0A175WCF0	A0A175W860	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
MMYC01_201433	MMYC01_202514	A0A175WCF0	A0A175WCS9	Proteasome subunit alpha type.	Proteasome activator BLM10.	0.990
MMYC01_201433	MMYC01_202615	A0A175WCF0	A0A175VZT5	Proteasome subunit alpha type.	Putative proteasome subunit beta type-2.	0.999
MMYC01_201433	MMYC01_202932	A0A175WCF0	A0A175WB08	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
MMYC01_201433	MMYC01_205600	A0A175WCF0	A0A175W096	Proteasome subunit alpha type.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.999
MMYC01_201433	MMYC01_206302	A0A175WCF0	A0A175VX63	Proteasome subunit alpha type.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
MMYC01_201433	MMYC01_206607	A0A175WCF0	A0A175VWG0	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
MMYC01_201433	MMYC01_207495	A0A175WCF0	A0A175VW30	Proteasome subunit alpha type.	VWFA domain-containing protein.	0.999
MMYC01_201433	MMYC01_210150	A0A175WCF0	A0A175VNQ0	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999