STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MMYC01_201288Cytoplasmic dynein 1 light intermediate chain 2. (543 aa)    
Predicted Functional Partners:
MMYC01_200669
Cytoplasmic dynein 1 intermediate chain 2.
   
 0.983
MMYC01_210348
Dynein heavy chain, cytoplasmic.
   
 0.970
MMYC01_201494
Dynein light chain Tctex-type.
    
 0.947
MMYC01_209524
Dynactin subunit 1.
   
 0.921
MMYC01_201194
Dynactin subunit 1.
   
 0.921
MMYC01_202322
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 0.915
MMYC01_204815
Nuclear control of ATPase protein 2.
    
  0.913
MMYC01_204816
Ras-related protein Rab-8A.
    
  0.913
MMYC01_202897
Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.
    
 0.911
MMYC01_208378
UDP-3-O-acylglucosamine N-acyltransferase 1.
    
 0.901
Your Current Organism:
Madurella mycetomatis
NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis
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