MMYC01_201247 protein (Madurella mycetomatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MMYC01_201247

Ribosomal_L18e/L15P domain-containing protein. (303 aa)

Predicted Functional Partners:

MMYC01_203317

0.998

MMYC01_200073

0.997

MMYC01_205366

0.997

MMYC01_204765

0.997

MMYC01_203233

0.997

MMYC01_202920

0.997

MMYC01_202667

0.997

MMYC01_202543

0.996

MMYC01_203353

0.996

MMYC01_201010

0.996

Your Current Organism:

Madurella mycetomatis

NCBI taxonomy Id: 100816
Other names: M. mycetomatis, Madurella ikedae, Madurella mycetomi, Streptotrix mycetomatis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MMYC01_200073	MMYC01_201010	A0A150ASQ4	A0A175WDF4	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Ribosomal_L2_C domain-containing protein.	0.998
MMYC01_200073	MMYC01_201247	A0A150ASQ4	A0A175WHZ3	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Ribosomal_L18e/L15P domain-containing protein.	0.997
MMYC01_200073	MMYC01_202543	A0A150ASQ4	A0A175W7C8	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.995
MMYC01_200073	MMYC01_202667	A0A150ASQ4	A0A175WCH1	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.998
MMYC01_200073	MMYC01_202920	A0A150ASQ4	A0A175WC27	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein.	0.999
MMYC01_200073	MMYC01_203233	A0A150ASQ4	A0A175W6N3	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.997
MMYC01_200073	MMYC01_203317	A0A150ASQ4	A0A175W7P4	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein.	0.998
MMYC01_200073	MMYC01_203353	A0A150ASQ4	A0A175WAM6	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Ribosomal protein S16, mitochondrial.	0.992
MMYC01_200073	MMYC01_204765	A0A150ASQ4	A0A175W5G1	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.993
MMYC01_200073	MMYC01_205366	A0A150ASQ4	A0A175W3H1	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Ribosomal_L5_C domain-containing protein.	0.997
MMYC01_201010	MMYC01_200073	A0A175WDF4	A0A150ASQ4	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.998
MMYC01_201010	MMYC01_201247	A0A175WDF4	A0A175WHZ3	Ribosomal_L2_C domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein.	0.996
MMYC01_201010	MMYC01_202543	A0A175WDF4	A0A175W7C8	Ribosomal_L2_C domain-containing protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.998
MMYC01_201010	MMYC01_202667	A0A175WDF4	A0A175WCH1	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.998
MMYC01_201010	MMYC01_202920	A0A175WDF4	A0A175WC27	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.998
MMYC01_201010	MMYC01_203233	A0A175WDF4	A0A175W6N3	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.997
MMYC01_201010	MMYC01_203317	A0A175WDF4	A0A175W7P4	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.997
MMYC01_201010	MMYC01_203353	A0A175WDF4	A0A175WAM6	Ribosomal_L2_C domain-containing protein.	Ribosomal protein S16, mitochondrial.	0.997
MMYC01_201010	MMYC01_204765	A0A175WDF4	A0A175W5G1	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.998
MMYC01_201010	MMYC01_205366	A0A175WDF4	A0A175W3H1	Ribosomal_L2_C domain-containing protein.	Ribosomal_L5_C domain-containing protein.	0.996