STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0010Protein of unknown function DUF1121. (197 aa)    
Predicted Functional Partners:
CHISP_0071
Anaerobic sulfite reductase subunit A.
  
 0.950
CHISP_0411
Pyruvate:ferredoxin oxidoreductase.
  
 
 0.947
CHISP_0490
2-oxoglutarate oxidoreductase, alpha subunit.
  
 
 0.844
CHISP_2878
NADP-dependent malic enzyme.
  
 
 0.835
CHISP_1299
Dihydroorotate dehydrogenase electron transfer subunit.
  
  0.826
CHISP_2211
ferredoxin-NADP(+) reductase subunit alpha.
  
  0.826
CHISP_1275
Citrate synthase.
  
 
  0.812
CHISP_1606
Bifunctional acetaldehyde/alcohol dehydrogenase.
  
 
 0.812
CHISP_2496
Citrate synthase.
   
 
  0.787
CHISP_1564
L-lactate permease.
  
  
 0.777
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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