STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_00131-deoxy-D-xylulose 5-phosphate synthase. (640 aa)    
Predicted Functional Partners:
CHISP_1394
1-deoxy-D-xylulose 5-phosphate reductoisomerase.
 
 
 0.928
CHISP_0235
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
  
 0.842
CHISP_0787
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase.
 
  
 0.822
CHISP_1687
Polyprenyl synthetase.
  
 0.811
CHISP_1306
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase.
 
   
 0.809
CHISP_2595
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
   
 0.774
CHISP_0411
Pyruvate:ferredoxin oxidoreductase.
    
  0.729
CHISP_0209
Triosephosphate isomerase.
    
 0.674
CHISP_3372
Thiamine biosynthesis protein ThiG.
     
 0.673
CHISP_2172
Glucose-6-phosphate isomerase.
     
 0.659
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.