STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0044Putative lipoprotein required for motility. (263 aa)    
Predicted Functional Partners:
CHISP_0045
Hypothetical protein.
 
     0.867
CHISP_0959
S-layer protein.
  
     0.761
CHISP_1944
Flagellar P-ring protein FlgI.
   
  
 0.659
CHISP_1945
Flagellar L-ring protein FlgH.
   
  
 0.659
CHISP_2573
Hypothetical protein.
  
     0.562
CHISP_0043
Hypothetical protein.
       0.553
CHISP_1861
Flagellar basal-body rod protein FlgB.
   
  
 0.513
CHISP_3398
Outer membrane protein assembly factor YaeT precursor.
  
     0.496
CHISP_1522
Hypothetical protein.
 
   
 0.481
CHISP_3457
Xylose isomerase.
  
     0.478
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.