STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0051Cytidine and deoxycytidylate deaminase family protein. (197 aa)    
Predicted Functional Partners:
CHISP_0052
Nitroreductase family protein.
  
    0.829
CHISP_1006
3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
 0.794
CHISP_0543
Phosphoribosyl-ATP pyrophosphatase.
   
  
 0.721
CHISP_0372
tRNA(Ile)-lysidine synthetase.
 
 
 0.690
CHISP_2971
Biotin operon repressor / Biotin-protein ligase.
  
    0.644
CHISP_2387
Amidohydrolase.
    
 0.641
CHISP_1501
Glyoxalase.
   
  
 0.634
CHISP_1750
Purine nucleoside phosphorylase.
    
 0.612
CHISP_0049
Outer membrane protein assembly factor YaeT.
     
 0.587
CHISP_1574
Adenine phosphoribosyltransferase.
    
  0.585
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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