Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CHISP_0049 | CHISP_0051 | Outer membrane protein assembly factor YaeT. | Cytidine and deoxycytidylate deaminase family protein. | 0.587 |
CHISP_0049 | CHISP_0052 | Outer membrane protein assembly factor YaeT. | Nitroreductase family protein. | 0.544 |
CHISP_0051 | CHISP_0049 | Cytidine and deoxycytidylate deaminase family protein. | Outer membrane protein assembly factor YaeT. | 0.587 |
CHISP_0051 | CHISP_0052 | Cytidine and deoxycytidylate deaminase family protein. | Nitroreductase family protein. | 0.829 |
CHISP_0051 | CHISP_0372 | Cytidine and deoxycytidylate deaminase family protein. | tRNA(Ile)-lysidine synthetase. | 0.690 |
CHISP_0051 | CHISP_0543 | Cytidine and deoxycytidylate deaminase family protein. | Phosphoribosyl-ATP pyrophosphatase. | 0.721 |
CHISP_0051 | CHISP_1006 | Cytidine and deoxycytidylate deaminase family protein. | 3,4-dihydroxy-2-butanone 4-phosphate synthase. | 0.794 |
CHISP_0051 | CHISP_1501 | Cytidine and deoxycytidylate deaminase family protein. | Glyoxalase. | 0.634 |
CHISP_0051 | CHISP_1574 | Cytidine and deoxycytidylate deaminase family protein. | Adenine phosphoribosyltransferase. | 0.585 |
CHISP_0051 | CHISP_1750 | Cytidine and deoxycytidylate deaminase family protein. | Purine nucleoside phosphorylase. | 0.612 |
CHISP_0051 | CHISP_2387 | Cytidine and deoxycytidylate deaminase family protein. | Amidohydrolase. | 0.641 |
CHISP_0051 | CHISP_2971 | Cytidine and deoxycytidylate deaminase family protein. | Biotin operon repressor / Biotin-protein ligase. | 0.644 |
CHISP_0052 | CHISP_0049 | Nitroreductase family protein. | Outer membrane protein assembly factor YaeT. | 0.544 |
CHISP_0052 | CHISP_0051 | Nitroreductase family protein. | Cytidine and deoxycytidylate deaminase family protein. | 0.829 |
CHISP_0052 | CHISP_1501 | Nitroreductase family protein. | Glyoxalase. | 0.613 |
CHISP_0372 | CHISP_0051 | tRNA(Ile)-lysidine synthetase. | Cytidine and deoxycytidylate deaminase family protein. | 0.690 |
CHISP_0372 | CHISP_1574 | tRNA(Ile)-lysidine synthetase. | Adenine phosphoribosyltransferase. | 0.633 |
CHISP_0372 | CHISP_1750 | tRNA(Ile)-lysidine synthetase. | Purine nucleoside phosphorylase. | 0.587 |
CHISP_0372 | CHISP_2387 | tRNA(Ile)-lysidine synthetase. | Amidohydrolase. | 0.598 |
CHISP_0543 | CHISP_0051 | Phosphoribosyl-ATP pyrophosphatase. | Cytidine and deoxycytidylate deaminase family protein. | 0.721 |
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