STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0097Leucyl-tRNA synthetase. (839 aa)    
Predicted Functional Partners:
CHISP_1694
Phenylalanyl-tRNA synthetase beta chain.
  
  
 0.997
CHISP_0624
Methionyl-tRNA synthetase.
  
0.996
CHISP_1749
Isoleucyl-tRNA synthetase.
 
0.988
CHISP_3540
Methionyl-tRNA synthetase.
 
 0.983
CHISP_0338
Glutamyl-tRNA synthetase.
  
 0.978
CHISP_1575
Asparaginyl-tRNA synthetase.
  
 0.973
CHISP_0337
Glutaminyl-tRNA synthetase.
   
 0.970
CHISP_0228
Arginyl-tRNA synthetase.
  
 0.969
CHISP_0822
Lysyl-tRNA synthetase (class II).
  
 0.968
CHISP_3227
Prolyl-tRNA synthetase.
  
 0.967
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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