STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0106Thymidylate kinase. (211 aa)    
Predicted Functional Partners:
CHISP_2811
dCMP deaminase.
   
 0.925
CHISP_1769
Recombination protein RecR.
    
 0.875
CHISP_1227
ATPase AAA.
  
 
 0.859
CHISP_1585
Nucleoside diphosphate kinase.
    
 0.845
CHISP_2106
Deoxyadenosine kinase.
  
 
 0.832
CHISP_0138
Phosphoribosylformylglycinamidine synthase, synthetase subunit.
  
    0.808
CHISP_0105
Preprotein translocase subunit SecA.
     
 0.790
CHISP_3109
Aminodeoxychorismate lyase.
 
  
 0.790
CHISP_1910
5'-nucleotidase.
  
  0.766
CHISP_2972
Pantothenate kinase.
   
   0.756
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.