STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHISP_0128Peptidyl-tRNA hydrolase. (210 aa)    
Predicted Functional Partners:
CHISP_0127
50S ribosomal protein L25p.
 
  
 0.918
CHISP_0175
GTP-binding and nucleic acid-binding protein YchF.
 
  
 0.908
CHISP_0372
tRNA(Ile)-lysidine synthetase.
 
  
 0.784
CHISP_0235
4-hydroxy-3-methylbut-2-enyl diphosphate reductase.
    
 
 0.762
CHISP_1032
Peptide chain release factor 2.
 
  
 0.757
CHISP_1342
Transcription-repair coupling factor.
  
  
 0.749
CHISP_0131
50S ribosomal protein L9p.
 
   
 0.667
CHISP_0859
Primosome assembly protein PriA.
  
    0.654
CHISP_0129
30S ribosomal protein S6p.
  
    0.643
CHISP_2177
Phosphoribosylanthranilate isomerase.
 
      0.639
Your Current Organism:
Chitinispirillum alkaliphilum
NCBI taxonomy Id: 1008392
Other names: C. alkaliphilum, Chitinispirillum alkaliphilum Sorokin et al. 2016, DSM 24539, UNIQEM U893, haloalkaliphilic bacterium ACht6-1, strain ACht6-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.